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Position: Is machine learning good or bad for the natural sciences? Machine learning (ML) methods are having a huge impact across all of the sciences. However, ML has a strong ontology-in which only the data exist-and a strong epistemology-in which a model is considered good if it performs well on held-out training data. These philosophies are in strong conflict with both standard practices and key philosophies in the natural sciences. Here, we identify some locations for ML in the natural sciences at which the ontology and epistemology are valuable. For example, when an expressive machine learning model is used in a causal inference to represent the effects of confounders, such as foregrounds, backgrounds, or instrument calibration parameters, the model capacity and loose philosophy of ML can make the results more trustworthy. We also show that there are contexts in which the introduction of ML introduces strong, unwanted statistical biases. For one, when ML models are used to emulate physical (or first-principles) simulations, they introduce strong confirmation biases.
For another, when expressive regressions are used to label datasets, those labels cannot be used in downstream joint or ensemble analyses without taking on uncontrolled biases. The question in the title is being asked of all of the natural sciences; that is, we are calling on the scientific communities to take a step back and consider the role and value of ML in their fields; the (partial) answers we give here come from the particular perspective of physics. It is an understatement to say that machine learning (ML) is having a big impact across the sciences. A significant fraction of all scientific papers in the natural sciences now employ ML in part (or all) of their analyses. We will define ML below in Section 2). However, when we ask what scientific breakthroughs have been enabled by this influx of new tools and methods, there isn’t a long list. The success of the AlphaFold projects in protein structure (Jumper et al., 2021) are often raised.
But these are successes in a very specific challenge-problem setting in which performance is valued over understanding. In the natural sciences we almost exclusively care about understanding, in the long run. The natural sciences are concerned with understanding the world, and naturally occurring mechanisms in play in that world. We make progress by discovering new kinds of objects and phenomena, and explaining (and, even better, predicting) qualitatively new kinds of objects and phenomena. Our most successful investigations are judged in terms of the questions they answer, or the new questions they raise, or both. The question here is: How will ML contribute to this mission? In contrast to natural science, ML research and ML methods are concerned with making accurate predictions for, or descriptions of, data. A ML method is considered successful if it performs well on held-out training data, even if the latent structure of the model is generic and the internals are impossible to interpret.